Package: corrDNA 1.0.1
corrDNA: Finding Associations in Position-Wise Aligned DNA Sequence Dataset
Can be useful for finding associations among different positions in a position-wise aligned sequence dataset. The approach adopted for finding associations among positions is based on the latent multivariate normal distribution.
Authors:
corrDNA_1.0.1.tar.gz
corrDNA_1.0.1.zip(r-4.5)corrDNA_1.0.1.zip(r-4.4)corrDNA_1.0.1.zip(r-4.3)
corrDNA_1.0.1.tgz(r-4.4-any)corrDNA_1.0.1.tgz(r-4.3-any)
corrDNA_1.0.1.tar.gz(r-4.5-noble)corrDNA_1.0.1.tar.gz(r-4.4-noble)
corrDNA_1.0.1.tgz(r-4.4-emscripten)corrDNA_1.0.1.tgz(r-4.3-emscripten)
corrDNA.pdf |corrDNA.html✨
corrDNA/json (API)
| # Install 'corrDNA' in R: |
| install.packages('corrDNA', repos = c('https://prabinameher.r-universe.dev', 'https://cloud.r-project.org')) |
- don_dat - A sample dataset of human donor splice sites.
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated 7 years agofrom:bec47fde2f. Checks:OK: 7. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Oct 31 2024 |
| R-4.5-win | OK | Oct 31 2024 |
| R-4.5-linux | OK | Oct 31 2024 |
| R-4.4-win | OK | Oct 31 2024 |
| R-4.4-mac | OK | Oct 31 2024 |
| R-4.3-win | OK | Oct 31 2024 |
| R-4.3-mac | OK | Oct 31 2024 |
Exports:assoc_combassoc_Zi.Zjassoc_Zi.ZjRassoc_Zi.ZjYassoc_ZiR.ZjRassoc_ZiR.ZjYassoc_ZiY.ZjY
Dependencies:mvtnorm
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Complete association matrix. | assoc_comb |
| Association between variable Z_{i} and Z_{j}. | assoc_Zi.Zj |
| Association between variable Z_{i} and Z_{jR}. | assoc_Zi.ZjR |
| Association between variable Z_{i} and Z_{jY}. | assoc_Zi.ZjY |
| Association between variable Z_{iR} and Z_{jR}. | assoc_ZiR.ZjR |
| Association between variable Z_{iR} and Z_{jY}. | assoc_ZiR.ZjY |
| Association between variable Z_{iY} and Z_{jY}. | assoc_ZiY.ZjY |
| A sample dataset of human donor splice sites. | don_dat |
